[gmx-users] (no subject)

[Justin Lemkul]

On 12/4/14 5:09 AM, Prajisha Sujaya wrote:
> i have one doubt whiling performing dynamics for ribosomal proteins, it
> consists of 21 proteins with different length. i have modeled and joined
> together as whole pdb.  while performing dynamics using gromacs in nvt step
> im getting error segmenuted dumped. in that file im getting step.pdb.
> How to overcome from this problem.Please help me...
>

Your simulation is crashing.  You haven't provided any useful diagnostic 
information, so there's not much to suggest.  See 
http://www.gromacs.org/Documentation/Terminology/Blowing_Up

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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