[gmx-users] MDP parameters for OPLS-aa + Verlet cutoff scheme

Jernej Zidar jernej.zidar at gmail.com
Fri Dec 5 04:21:22 CET 2014


Hi everyone,
  I would like to run some protein simulations using the OPLS-aa
forcefield and I'm wondering what would the "correct" parameters be.
Is there a set of agreed-upon parameters that are safe to use?

  After some research I found a set of parameters here:
https://github.com/orbeckst/GromacsWrapper/blob/master/gromacs/templates/md_OPLSAA_gpu.mdp

  Are those "safe" to use?

Thanks in advance!

Jernej Zidar


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