[gmx-users] Maximun time-step recommended in the grompp part for each system
Mario Fernández Pendás
mariofp77 at gmail.com
Thu Dec 11 18:20:32 CET 2014
Taking look at the check_bonds_timestep() function in src/kernel/grompp.c
used for checking the time-step used for the integration of the equations
of motion a few questions come to me:
- In the comments of the function it is said that "The stability limit of
leap-frog or velocity verlet is 4.44 steps per oscillational period". Does
anyone know how this exact number is obtained?
- I see that, inside of the function, there are two "limits": 5 and 10.
They are used for establishing a relation between the estimated oscillation
period of the bond between two atoms of the system in use and the time-step
used for integrating the equations of motion and giving a warning message
in case of using a non suitable time-step. I assume, looking at the
literature, that this limits are taking from the following paper by Mazur:
Am I right?
I have also found an issue in redmine for the function
check_bonds_timestep() reporting that it only reports the first suspicious
bond. I think this does not affect my questions.
Thank you very much.
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