[gmx-users] Ions drifting
jalemkul at vt.edu
Tue Dec 16 13:44:40 CET 2014
On 12/16/14 1:34 AM, jani vinod wrote:
> Dear All,
> I am trying to carry out simulation of protein at 0.5 mM concentration of
> It has been observed that within few nanosecond ions begin to drift in one
> direction and protein in other direction. I am using Amberff03 force filed.
> What may the reason for the same.
No idea unless you show us your .mdp file and any commands you're giving. Is
this drift observed in the raw trajectory, or in something you've manipulated
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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