[gmx-users] martinize.py: option for partly have elastic network on partly in the protein

[XAvier Periole]

There is no specific option to do this but you can go in the itp file where the electric network is defined and comment out the section corresponding to the n-terminus. 

> On Dec 18, 2014, at 14:57, shivangi nangia <shivangi.nangia at gmail.com> wrote:
> 
> Dear gmx-users,
> 
> I wish to coarse grain a  peptide, while keeping only the N-terminal
> flexible (elastic network off) and rest protein elastic on.
> 
> Is there any option/flag to selectively pick residues on which I do not
> want elastic network on.
> 
> Kindly suggest.
> 
> Thanks in advance,
> sxn
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