[gmx-users] length of beta sheet

[pratibha kapoor]

Hi everyone,

I would like to calculate length of beta sheet. Is this any automatic tool
to serve the purpose?
To elaborate, I am aware that dssp can give me whether the residue is in
beta sheet ("E") or not at each time frame but I want to know exactly how
many hydrogen bonds are formed by each residue in E (and not just E if
minimum criterion of two hydrogen bonds is satisfied by DSSP). From this I
would like to calculate length of beta sheet.

Any help is highly appreciated.