[gmx-users] conversion of amber outputs to gromacs

[shahab shariati]

Dear gromacs users

I did md simulation of my system (protein+ligand) using amber.

I want to do some analysis using gromacs.

In gromacs, I need to xtc and top file for analysis. How do I convert mdcrd
to xtc and prmtop to top files?

I used AMBER 10 for doing MD simulation.

I used amber03 force field for protein and antechamber for ligand.

Any help will highly appreciated.