[gmx-users] Molecular volume from trajectory

Erik Marklund erik.marklund at chem.ox.ac.uk
Tue Feb 4 12:15:06 CET 2014


Hi,

g_sas is the tool for you.

Kind regards,
Erik


Erik Marklund, PhD
Postdoctoral Research Associate

Department of Chemistry
Physical & Theoretical Chemistry Laboratory
University of Oxford
South Parks Road
Oxford
OX1 3QZ

On 4 Feb 2014, at 10:52, Андрей Гончар <gontchar at gmail.com> wrote:

> Hi all
> Is there a tool to calculate molecular volume for a whole MD trajectory?
> I.e. I'd like to see how does the molecule changes its volume during MD.
> I know that there are many external tools for this purpose, but maybe I'm
> wrong and GROMACS already has something for that?
> Thanks in advance
> -- 
> Andrew Gonchar
> Андрей Гончар
> -- 
> Gromacs Users mailing list
> 
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
> 
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.



More information about the gromacs.org_gmx-users mailing list