[gmx-users] Periodic Boundary removal in Coarse Grains Simulations

Nikhil Agrawal nikhil.08oct at gmail.com
Sat Feb 22 18:43:53 CET 2014

Hi All,

I have simulated a membrane proteins system using coarse grain model. after
simulations when i removed periodic boundary from my simulations box but
 the protein is moving up and down in the box ?  I have tried all the
options nojump ,mol,whole ...etc. no options seems to work.

there is something wrong with my trajectory or it is normal with CG ?

thanks in advance :)

Nikhil Agrawal
Project Fellow
Institute of Genomic & Integrative Biology (IGIB)
Mathura Road
New Delhi 110020

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