[gmx-users] help with "interaction of type atom in the topology database, but an atom of that name was not found in residue" error

paulxie amianxie at gmail.com
Wed Jan 8 15:40:18 CET 2014

Thanks for the answer! However, when I run the command below:

 grompp -f ions.mdp -c xxx_solv.gro -p xxx_topol.top -o xxx_ion.tpr

It keeps showing the error message:

Fatal error: 
Topology include file "ff_dum.itp" not found 

Is there a possible way I can skip or not include the file 'ff_dum.itp'? 

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