[gmx-users] About membrane protein

[paulxie]

Hi everyone,

I am doing a simulation of lipid bilayer and membrane protein following the
tutorial on the VT webpage. Everything is fine except  the generated
confout.gro after I ran energy minimization (mdrun -deffnm confout -nt 1).
The inserted membrane protein (transmembrane helix + extra-cellular domain)
totally came out of the lipid bilayer. Have anyone met this before? Thanks!

Best,
Paul

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