[gmx-users] About membrane protein

[Justin Lemkul]

On 1/13/14, 6:28 PM, paulxie wrote:

>> I am applying the tutorial's procedure to another membrane protein with an
>> extra-cellular domain. I had tried your tutorial system before this and
>> didn't meet this problem. Thanks Justin!
>>

You will have to position the protein differently if it is oriented 
asymmetrically with respect the the membrane.  The same principles apply, but 
box vectors will certainly be different, as will the editconf command.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

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