[gmx-users] Any ideas to evaluate 2D sliced RDF

[Bin Liu]

Hi All,

I would like to do an analysis of water's properties near PC/PG headgroups
compared to those of bulk water. One useful property I can think of is 2D
sliced RDF, i.e., the lateral radial distribution function of water in a
thin layer, or say, dividing a thick slab of water into thin layers and
evaluate lateral RDFs for each layer. However, I am not aware of any tools
capable of doing that. Is this feasible at all? Any ideas to calculate it?
Thanks.


Cheers,

Bin