[gmx-users] protein-ligand complex

[Justin Lemkul]

On 1/17/14, 9:54 AM, Mahboobeh Eslami wrote:
> dear justin
> thanks a lot
> if i use flexible receptor in docking process, must i  change  the coordinates
> of the protein as initial configuration  in the MD simulation?

No, that doesn't make any sense and only serves to add another variable into an 
already unclear situation.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

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