[gmx-users] choose the reference structure of Gromacs

Ahmet yıldırım ahmedo047 at gmail.com
Sat Jan 18 15:18:36 CET 2014

Dear users,

How do Gromacs choose the reference structure for the fit the trajectory?
For example:
g_rms -f traj.xtc -s topol.tpr

The reference structure is first frame (-dump 0:closest to the first frame)
of the trajectory for above command?

Ahmet Yıldırım

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