[gmx-users] g_helixorient help

[rajat desikan]

Hi All,
Any suggestions?

Thanks.


On Mon, Jan 27, 2014 at 5:01 PM, rajat desikan <rajatdesikan at gmail.com>wrote:

> Hi All,
> I am trying to calculate the angle between the axes of two alpha helices
> (say A and B) in my simulation. I have separate index files for the
> residues pertaining to each helix.
>
> I calculated the tilt.xvg for both A and B. The output is slightly
> confusing. tilt_A.xvg when viewed with xmgrace -nxy shows 27 data sets.
> What do these correspond to? (Helix A has 34 residues). Similarly for
> bending_A.xvg
>
> How do I go about this? Is this the right way to calculate the relative
> helix axis angle?
>
> Thanks,
>
> --
> Rajat Desikan (Ph.D Scholar)
> Prof. K. Ganapathy Ayappa's Lab (no 13),
> Dept. of Chemical Engineering,
> Indian Institute of Science, Bangalore
>



-- 
Rajat Desikan (Ph.D Scholar)
Prof. K. Ganapathy Ayappa's Lab (no 13),
Dept. of Chemical Engineering,
Indian Institute of Science, Bangalore