[gmx-users] Some basic questions about trajconv

Yip Yew Mun yipy0005 at gmail.com
Wed Jul 2 06:52:42 CEST 2014

Hi all,

I’ve recently switched from AMBER and started using Gromacs. I have just ran a CG MD and I wish to do post-analysis on the trajectory. So if I wish to center my molecule in the water box, then remove the waters, what should the appropriate command for trajconv be?

Thanks, any help would be greatly appreciated. =)

Yip Yew Mun (Mr) | PhD Research Scholar | Division of Chemistry & Biological Chemistry
School of Physical & Mathematical Sciences | Nanyang Technological University | Singapore 639798
Tel: (+65) 97967803 | Email: yipy0010 at e.ntu.edu.sg | GMT+8h

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