[gmx-users] Graphene topology file

[Justin Lemkul]

On 7/3/14, 12:48 AM, #SUKRITI GUPTA# wrote:
> Dear Justin,
>
> Thanks for the reply but I am writing the .n2t file still getting the error that "Could not find force field 'graphite_oplsaa' in current directory, install tree or GMXDATA path". What should I do? Moreover i don't think that n2t file tells program to use graphite_oplsaa force field.
>

Well, as noted before, the tutorial there relies on a very old setup, so you 
shouldn't be following it exactly.  The better approach is to:

1. Make a copy of the oplsaa.ff force field into your working directory
2. Modify its contents as needed to introduce any new atom types and bonded 
parameters
3. Write the .n2t file within that directory and make use of that one rather 
than any included in the force fields in $GMXLIB

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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