[gmx-users] problem with calculating angles and dynamic selections
gigo
gigo at ibb.waw.pl
Thu Jul 3 16:12:23 CEST 2014
Hi!
I find it impossible to calculate (some) angles between atoms using
dynamic selection in 'gmx gangle' command. The problem is, that the
dynamic selection mechanism persistently sorts numbers of atoms
specified in the input. So, if I have atoms A, B and C with ascending
indexes, I am not able to calculate angle B-A-C - I only get value for
A-B-C, no matter how I order them in the command line. Is there any way
to do it without writing an index file (which I have to parse anyway,
because the same mechanism sorts atoms in 'gmx select'...)? If not, I
will submit a feature request on redmine - something like -nosort
option...
Regards,
Grzegorz Wieczorek
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