[gmx-users] confout.gro

[RINU KHATTRI]

hello gromacs users
but i am confussed if confout.gro is input, in which step it is formed
according to tutorial before this step the step is
perl inflategro.pl system.gro 4 POPC 0 system_inflated.gro 5 area.dat
is system_inflated.gro is confout.gro or which gro file i must be used
as confout.gro

perl inflategro.pl confout.gro 0.95 POPC 0 system_shrink1.gro 5
area_shrink1.dat
help


On 7/4/14, Victor Rosas Garcia <rosas.victor at gmail.com> wrote:
> The error message says that the perl script could not find a file named
> confout.gro.  Either generate one or put it in the correct directory, so
> the script can find it.
>
> Victor
>
>
> 2014-07-04 3:48 GMT-05:00 RINU KHATTRI <nickname.mittu at gmail.com>:
>
>> hello gromacs users now i am at minimization step  but one error after
>> the
>> command
>>
>>  perl inflategro.pl confout.gro 0.95 POPC 0 system_shrink1.gro 5
>> area_shrink1.dat
>> Eeeeek! No confout.gro at all!
>>
>> Died at inflategro.pl line 104.
>>  before this command i ran
>>
>> perl inflategro.pl system.gro 4 POPC 14 system_inflated.gro 5 area.dat
>>
>> help
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