[gmx-users] strange but true : How to explain and avoid?

[Chetan Mahajan]

Thanks, Tsjerk and Justin. I was under the impression that there could be
non-gcq messages other than the one containing thanks. So I thought 2 >
stderr.log is the best option.


On Tue, Jul 8, 2014 at 3:50 PM, Tsjerk Wassenaar <tsjerkw at gmail.com> wrote:

> Or:
>
> sed -i '/gcq/d;/Thanx/d;' dump.out
>
> on Mac:
>
> sed -i.bck '/gcq/d;/Thanx/d;' dump.out
>
> Cheers,
>
> Tsjerk
>
>
> On Tue, Jul 8, 2014 at 10:43 PM, Justin Lemkul <jalemkul at vt.edu> wrote:
>
> >
> >
> > On 7/8/14, 4:02 PM, Chetan Mahajan wrote:
> >
> >> Hi Justin,
> >>
> >> If it's just gcq, then there is no problem to locate and remove. But as
> I
> >> mentioned in one of the emails, there could be any other messages like
> >> "Thanx
> >> for Using GROMACS - Have a Nice Day". So detecting them and manually
> >> removing them does not seem smooth. I think 2 > stderr.log seems the
> best
> >> option.
> >>
> >>
> > The "Thanx" message only shows up if you've disabled cool quotes, but
> > regardless this is another simple grep -v statement.
> >
> > grep -v "gcq" dump.out | grep -v "Thanx" > dump_clean.out
> >
> > would take care of both, regardless of cool quotes settings.
> >
> > -Justin
> >
> >
> >  Thanks
> >> Chetan
> >>
> >>
> >> On Tue, Jul 8, 2014 at 11:47 AM, Justin Lemkul <jalemkul at vt.edu> wrote:
> >>
> >>
> >>>
> >>> On 7/8/14, 12:44 PM, Chetan Mahajan wrote:
> >>>
> >>>  Hi Tsjerk,
> >>>>
> >>>> Thanks. I get it. So in verision 4.6.5, adding 2>/dev/null at the end
> of
> >>>> the command seems the only way out, since, as I said, I am also
> getting
> >>>> greeting messages in addition to gcq quotes. However, adding
> >>>>  2>/dev/null
> >>>>   will
> >>>> also suppress unusual errors, if any at all. There does not seem a way
> >>>> out
> >>>> of this.
> >>>>
> >>>>
> >>>>  Is there a reason these quotes or messages are causing a problem?  If
> >>> you're simply dumping to a text file, a simple grep -v "gcq" will get
> rid
> >>> of the quotes lines and you can continue doing whatever you were doing
> >>> before.
> >>>
> >>>
> >>> -Justin
> >>>
> >>> --
> >>> ==================================================
> >>>
> >>> Justin A. Lemkul, Ph.D.
> >>> Ruth L. Kirschstein NRSA Postdoctoral Fellow
> >>>
> >>> Department of Pharmaceutical Sciences
> >>> School of Pharmacy
> >>> Health Sciences Facility II, Room 601
> >>> University of Maryland, Baltimore
> >>> 20 Penn St.
> >>> Baltimore, MD 21201
> >>>
> >>> jalemkul at outerbanks.umaryland.edu | (410) 706-7441
> >>> http://mackerell.umaryland.edu/~jalemkul
> >>>
> >>> ==================================================
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> >>>
> > --
> > ==================================================
> >
> > Justin A. Lemkul, Ph.D.
> > Ruth L. Kirschstein NRSA Postdoctoral Fellow
> >
> > Department of Pharmaceutical Sciences
> > School of Pharmacy
> > Health Sciences Facility II, Room 601
> > University of Maryland, Baltimore
> > 20 Penn St.
> > Baltimore, MD 21201
> >
> > jalemkul at outerbanks.umaryland.edu | (410) 706-7441
> > http://mackerell.umaryland.edu/~jalemkul
> >
> > ==================================================
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>
>
>
> --
> Tsjerk A. Wassenaar, Ph.D.
> --
> Gromacs Users mailing list
>
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