[gmx-users] Fwd: DSSP- error

Uma Devi renumaphy at gmail.com
Wed Jul 9 14:37:21 CEST 2014

Dear gromacs users,
i am using gromacs 4.6.2. i tried the secondary structure analysis, using
do_dssp. but i got the following error.
Fatal error:
Failed to execute command: /usr/local/bin/dssp.exe -na ddFyZGQ1 ddTj0ABl >
/dev/null 2> /dev/null.

i am using amd, with cemtos. i downloaded dssp executable, then placed it
in /usr/local/bin.
i gave permission using chmod a+x dssp.
then i export dssp from my folder using
export DSSP=/usr/local/bin/dssp
please help me to sort it out the problem

Thanks in advances

Umadevi Palanivel

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