[gmx-users] scount.xvg analysis

[Justin Lemkul]

On 7/12/14, 3:48 AM, elham tazikeh wrote:
> Dear Users
> i,d like to have a figure , *residue numbers* vs* the percent of
> alpha-helix, beta-sheet and other secondary structures*
> but i can not plot them...
> is there any way to solve my problem?

The .xpm file can be parsed with any scripting language you like to track the 
occurrence of each type of secondary structure element per residue.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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