[gmx-users] Problem related to solvating CNT and then removing out the molecules inside CNT

[vivek sinha]

Hi All,
I solvated the CNT but then I wanted to remove the water molecules from
inside the CNT. I made a C++ script and have removed but the topology file
is still not updated. How can I update the topology file?
Thanks,
Vivek Sinha

PS: I have update the topology after complete solvation but not after
removing the H2O molecules. Please help me!