[gmx-users] Installing 5.0 on Cygwin - Getting error

[Roland Schulz]

On Mon, Jul 21, 2014 at 7:17 PM, Mirco Wahab <
mirco.wahab at chemie.tu-freiberg.de> wrote:

> On 22.07.2014 00:51, John Doe wrote:
> > [  8%] Building CXX object
> src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o
> > /home/User/gromacs/gromacs-5.0/src/gromacs/gmxpreprocess/fflibutil.cpp:
> In function ‘int low_fflib_search_file_end(const char*, gmx_bool, const
> char*, gmx_bool, char***, char***)’:
> >
> /home/User/gromacs/gromacs-5.0/src/gromacs/gmxpreprocess/fflibutil.cpp:205:47:
> error: ‘strdup’ was not declared in this scope
> >                           fns[n] = strdup(fn_dir);
>
> clean up the build directory,
>
> + add -DBUILD_SHARED_LIBS=off to your cmake invocation
>
why? For me it works fine without. What problem do you see without this? If
this is something common we probably should set this by default.


> + edit gromacs file src/external/thread_mpi/src/impl.h
>    add (as first line) above everything else:
>
>    #define HAVE_SYS_TIME_H
>

in which cases do you need to do that? If we can identify the problem we
can fix it in cmake.

Roland


>
> + rebuild
>
>
>
> Regards
>
> M.
>
>
>
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