[gmx-users] Error in system_inflate.gro coordinates does not match

Justin Lemkul jalemkul at vt.edu
Fri Jul 25 03:48:49 CEST 2014

On 7/24/14, 11:57 AM, RINU KHATTRI wrote:
> hello everyone
> thank you justin
> i did the same
> till minimization without the ligand it is in the lipid and center but i
> edit the box size arbitrary i used x and y axis as present in popc but in z
> axis used 10.00000 so there is overlapping of protein and lipid  i think
> this can create problem

I don't understand if there is a question or problem here.  If something is 
wrong, provide the exact command(s) used and provide images of the undesirable 
output.  Without that information, there's nothing that I or anyone else can do 
to help you.



Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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