[gmx-users] DSSP -regarding

Uma Devi renumaphy at gmail.com
Mon Jun 9 05:57:48 CEST 2014

hi Tsjerk,
 thanks for your reply.sorry for the late reply. if i type the dssp -h it
shows the following message

DSSP 2.0.4 options:
  -h [ --help ]         Display help message
  -i [ --input ] arg    Input file
  -o [ --output ] arg   Output file, use 'stdout' to output to screen
  -v [ --verbose ]      Verbose output
  --version             Print version
  -d [ --debug ] arg    Debug level (for even more verbose output)


To calculate the secondary structure for the file 1crn.pdb and
write the result to a file called 1crn.dssp, you type:

  dssp.exe -i 1crn.pdb -o 1crn.dssp

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