[gmx-users] Regarding membrane construction

Justin Lemkul jalemkul at vt.edu
Mon Jun 9 23:28:46 CEST 2014

On 6/9/14, 9:08 AM, Venkat Reddy wrote:
> Dear Justin,
> I have tried the command
> genbox -cp protein.gro -cs membrane.gro -o protein_in_membrane.gro
>   but it got hanged. Is there something wrong with the command?

I wouldn't expect a hang as long as the box is set to appropriate dimensions. 
The new box for the protein shouldn't be substantially larger than the membrane 



Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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