[gmx-users] (no subject)

[Vedat Durmaz]

then, i don't know what to do. may be your email provider sorts them out
or something.

anyway, did you get justin's answer he sent recently? see below ..

vedat



On 6/12/14, 4:54 AM, Balasubramanian Suriyanarayanan wrote:
> Dear friends, In protein lipid simulation , when I do energy minimisation
> ster I get an error as " Eeeeek! No confout.gro at all!
>
>                 Died at inflategro.pl line 104."
>
> What is "confout.gro". If am right it is the output file that we get from
> the minimisation step.
>
> I used the command " perl inflategro.pl confout.gro 0.95 POPC 0
> system_shrink1.gro 5 area_shrink1.dat".
>

You're specifying confout.gro as the source of coordinates.  Apparently
that file doesn't exist in the working directory, so InflateGRO is
giving you an error.

-Justin



Am 12.06.2014 11:46, schrieb Balasubramanian Suriyanarayanan:
> but I get other mails.
>
> even the last one which i have sent with out title has appeared.
>
> regards
> Suriyanarayanan
>
>
> On Thu, Jun 12, 2014 at 3:14 PM, Vedat Durmaz <durmaz at zib.de
> <mailto:durmaz at zib.de>> wrote:
>
>
>     i've recieved your email concernig "energy minimisation step in
>     protein
>     lipid simulation" already 3 times ..
>
>
>     maybe you've deactivated the delivery of mails? if so, do the
>     following:
>
>     go to
>     https://mailman-1.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users
>
>     and log in where it says "To unsubscribe from
>     gromacs.org_gmx-users, get
>     a password reminder, or change your subscription options enter your
>     subscription email address:"
>
>     there you can change your personal settings.
>
>     vedat
>
>
>
>     Am 12.06.2014 11:31, schrieb Balasubramanian Suriyanarayanan:
>     > Why is my questions not appearing in the forum.
>     >
>     > Do I not follow the rules.'
>     > Please clarify.
>     >
>     >
>     > regards
>     >
>     > Suriyanarayanan
>
>