[gmx-users] Regarding lipid topology

Dr. Vitaly Chaban vvchaban at gmail.com
Mon Jun 16 13:15:18 CEST 2014

Of course, no. You need to adjust your topology (force field?) to
distinguish between cis- and trans- states.

Dr. Vitaly V. Chaban

On Mon, Jun 16, 2014 at 11:03 AM, Venkat Reddy <venkat4bt at gmail.com> wrote:
> Dear all,
> I want to simulate a membrane protein system. My membrane is composed of
> DOPC (cis isomer) and DEPC (trans isomer). I have downloaded DOPC topology
> from lipidbook website. Since DOPC and DEPC are isomers, can I use the
> topology of DOPC for DEPC also?
> Thank and regards
> Venkat Reddy Chirasani
> PhD student
> Laboratory of Computational Biophysics
> Department of Biotechnology
> IIT Madras
> Chennai
> INDIA-600036
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