[gmx-users] Regarding lipid topology

[Dr. Vitaly Chaban]

Of course, no. You need to adjust your topology (force field?) to
distinguish between cis- and trans- states.


Dr. Vitaly V. Chaban


On Mon, Jun 16, 2014 at 11:03 AM, Venkat Reddy <venkat4bt at gmail.com> wrote:
> Dear all,
> I want to simulate a membrane protein system. My membrane is composed of
> DOPC (cis isomer) and DEPC (trans isomer). I have downloaded DOPC topology
> from lipidbook website. Since DOPC and DEPC are isomers, can I use the
> topology of DOPC for DEPC also?
>
> Thank and regards
>
> Venkat Reddy Chirasani
> PhD student
> Laboratory of Computational Biophysics
> Department of Biotechnology
> IIT Madras
> Chennai
> INDIA-600036
> --
> Gromacs Users mailing list
>
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.