[gmx-users] mdrun error

[Justin Lemkul]

On 6/25/14, 8:00 AM, Lovika Moudgil wrote:
> Hi Everyone...Need some help...
>
> I got the following error in my mdrun ....Plese help me to understand this
> error...What this error is all about and what should I do to remove this .
>
> -------------------------------------------------------
> Program mdrun, VERSION 4.6.5
> Source code file:
> /home/itlab/Documents/gromacs/gromacs-4.6.5/src/gmxlib/smalloc.c, line: 241
>
> Fatal error:
> Not enough memory. Failed to realloc 473717812 bytes for grid->index,
> grid->index=0x2987d008
> (called from file
> /home/itlab/Documents/gromacs/gromacs-4.6.5/src/mdlib/nsgrid.c, line 493)
> For more information and tips for troubleshooting, please check the GROMACS
> website at http://www.gromacs.org/Documentation/Errors
>

Your hardware lacks sufficient memory to run the simulation.  Either install 
more memory or find hardware suitable for the simulation.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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