[gmx-users] probability density map

[GtrAngus]

Hi pratibha,

in my opinion, you have 2 choices:

1.) You use VMD and switch the view to hydrogen-bonds. There are different
options to do so, but afaik it is always 3D.

2.) You make your own C/C++-Code. But of course, this is much more work to
do :)

I guess it depends what you wanna do? Just for taking a look at the system,
try #1. For further calculations you should try #2.

Best, GtrAngus

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