[gmx-users] forming disulfide linkage between two chains

[tasneem kausar]

sir

I am trying to make disulfide linkage between chain A and B.
The command line is "pdb2gmx -f prtn.pdb -o prtn.gro -p prtn.top -ss.
I have used -ss option of pdb2gmx but disufide linkage is not formed
between the chains A and B.
What is the possible way to form the disulfide linkage in Gromacs usind the
pdb2gmx.
Please resolve the issue


Thanks in Advance