[gmx-users] introduce Fluor as a accepotor in calculating hbonds

[nazli kashani javid]

Hi all,

I want to calculate occupancy of hbond for my protein, there are one type
 modified residue in my structure (all hydrogens in leucine amino acid have
substituted by fluor). For calculating occupancy, I used *plot_hbmap.pl
<http://plot_hbmap.pl>*. unfortunately F didn't report as an acceptor or
donor in my output.dat file. so Is there any way to introduce F as an
acceptor?

any help is appreciated.