[gmx-users] binding free energy

[Vitaly V. Chaban]

" needs administrative privileges"




On Sun, Aug 16, 2015 at 1:41 PM, elham tazikeh <elham.tazikeh at gmail.com> wrote:
> Dear Users
> for g_mmpbsa installation (by using source code and APBS 1.4 and gromacs
> 4.6.7)
> after below command:
> pdfco at pdfco-X:~/g_mmpbsa/build$ cmake -DGMX_PATH=/opt/gromacs \
>> -DAPBS14=on \
>> -DAPBS_INSTALL=/opt/apbs \
>> -DCMAKE_INSTALL_PREFIX=/usr/local/bin/g_mmpbsa \
>> ..
> i saw:
>
> -- The C compiler identification is GNU 4.8.2
> -- The CXX compiler identification is GNU 4.8.2
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Configuring done
> -- Generating done
> -- Build files have been written to: /home/pdfco/g_mmpbsa/build
>
> and after that by using make:
> i ve got this messages:
> Scanning dependencies of target energy2bfac
> [ 10%] Building C object src/CMakeFiles/energy2bfac.dir/energy2bfac.c.o
> Linking C executable energy2bfac
> [ 10%] Built target energy2bfac
> Scanning dependencies of target g_mmpbsa
> [ 20%] Building C object src/CMakeFiles/g_mmpbsa.dir/main.c.o
> [ 30%] Building C object src/CMakeFiles/g_mmpbsa.dir/energy_mm.c.o
> [ 40%] Building C object src/CMakeFiles/g_mmpbsa.dir/InputPBSA.c.o
> [ 50%] Building C object src/CMakeFiles/g_mmpbsa.dir/nsc.c.o
> [ 60%] Building C object src/CMakeFiles/g_mmpbsa.dir/PbsaPrep.c.o
> [ 70%] Building C object src/CMakeFiles/g_mmpbsa.dir/psize.c.o
> [ 80%] Building C object src/CMakeFiles/g_mmpbsa.dir/radius.c.o
> [ 90%] Building C object src/CMakeFiles/g_mmpbsa.dir/apbs14_main.c.o
> [100%] Building C object src/CMakeFiles/g_mmpbsa.dir/apbs14_routines.c.o
> Linking CXX executable g_mmpbsa
> [100%] Built target g_mmpbsa
> pdfco at pdfco-X:~/g_mmpbsa/build$ sudo make install
> [sudo] password for pdfco:
> [ 10%] Built target energy2bfac
> [100%] Built target g_mmpbsa
> Install the project...
> -- Install configuration: ""
> CMake Error at src/cmake_install.cmake:50 (FILE):
>  file cannot create directory: /usr/local/bin/g_mmpbsa/bin.  Maybe need
>  administrative privileges.
> Call Stack (most recent call first):
>  cmake_install.cmake:37 (INCLUDE)
>
> make: *** [install] Error 1
> Also i ve got this error:
>
> CMake Error: The source directory "/home/pdfco/g_mmpbsa/build/ .." does not
> exist.
> Specify --help for usage, or press the help button on the CMake GUI.
>
> i really apprciatefor any help
> Sign in to reply
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