[gmx-users] Problems plotting gyrate.xvg

Smith, Micholas D. smithmd at ornl.gov
Tue Aug 18 16:07:16 CEST 2015


What exact is your input? And what version of gromacs?

Micholas Dean Smith, PhD.
Post-doctoral Research Associate
University of Tennessee/Oak Ridge National Laboratory
Center for Molecular Biophysics

From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> on behalf of Daniela Rivas <dani.rivas.r at gmail.com>
Sent: Tuesday, August 18, 2015 10:00 AM
To: gromacs.org_gmx-users at maillist.sys.kth.se
Subject: [gmx-users] Problems plotting gyrate.xvg


I've been trying to plot the radius of gyration I got using gromacs, but I
keep getting the segmentation fault. What does this mean? I have plenty
memory (32 TB), so it can't be a memory problem.

My trajectory has 40000 frames (20 ns simulation) and I'm calculating the
radius of gyration of my protein (~7000 atoms).

Thanks in advance.

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