[gmx-users] Problem compiling Gromacs 5.1

[Mark Abraham]

Hi,

You should change line 52 from what it is, to what I suggested - which
inserts quotation marks around one of the variable interpolations.

Mark

On Thu, Aug 20, 2015 at 2:43 PM 岡部篤俊 <atsutoshi0708 at gmail.com> wrote:

> Thanks, Peter.
> But , I mean I don’t know what line I should change to from line 52 of
> cmake/FindPhinx.cmake to solve this error.
>
> Leucer
>
> 2015/08/20 16:02、Kroon, P.C. <p.c.kroon at rug.nl> のメール：
>
> > Just use your favourite text editor.
> >
> > Peter
> >
> > On Thu, Aug 20, 2015 at 3:10 AM, <atsutoshi0708 at gmail.com> wrote:
> >
> >> Line 52 of cmake/FindSphinx.cmake file is written below.
> >> string(REGEX REPLACE "Sphinx \\([^)]*\\) ([^ ]+)" "\\1"
> >> SPHINX_EXECUTABLE_VERSION "${SPHINX_VERSION_OUTPUT_VARIABLE}")
> >>
> >> Can you tell me how I can change the line?
> >>
> >> Bests,
> >> Leucer
> >>
> >>
> >> 2015/08/19 23:11、Mark Abraham <mark.j.abraham at gmail.com> のメッセージ:
> >>
> >>> Hi,
> >>>> On Wed, Aug 19, 2015 at 3:49 PM 岡部篤俊 <atsutoshi0708 at gmail.com> wrote:
> >>>>
> >>>> Hi,
> >>>>
> >>>> I am unable to  compile Gromamcs 5.1 using the following cmake
> command.
> >>>> cmake .. -DGMX_FFT_LIBRARY=fftpack
> >>>> -DCMAKE_INSTALL_PREFIX=gromacs/gromacs-5.1 -DGMX_DOUBLE=off
> >>>> -DGMX_THREAD_MPI=off -DGMX_MPI=on -DGMX_CPU_ACCELERATION=SSE4.1
> >>>
> >>>
> >>> Unrelated, but you now need to use -DGMX_SIMD=SSE4.1 to have the same
> >>> effect.
> >>>
> >>>
> >>>> -DGMX_USE_RDTSCP=off
> >>>>
> >>>> Then I got the error message.
> >>>> Boost >= 1.44 not found. Using minimal internal version. This may
> cause
> >>>> trouble if you plan on compiling/linking other software that uses
> Boost
> >>>> against GROMACS.
> >>>> CMake Error at cmake/FindSphinx.cmake:52 (string):
> >>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments
> total
> >>>> to
> >>>> command.
> >>>> Call Stack (most recent call first):
> >>>> docs/CMakeLists.txt:62 (find_package)
> >>>>
> >>>> Could you advice what could be causing this error?
> >>>
> >>> We try to find Sphinx in case people want to build the new
> documentation,
> >>> but it looks like some part of the detection isn't reliable enough. Can
> >> you
> >>> please try changing line 52 of cmake/FindSphinx.cmake to read
> >>>
> >>>   string(REGEX REPLACE "Sphinx \\([^)]*\\) ([^ ]+)" "\\1"
> >>> SPHINX_EXECUTABLE_VERSION "${SPHINX_VERSION_OUTPUT_VARIABLE}")
> >>>
> >>> and let us know how you go?
> >>>
> >>> Mark
> >>>
> >>> I was able to compile Gromacs 5.0 using same cmake command….
> >>>>
> >>>> Bests,
> >>>> Leucer
> >>>> --
> >>>> Gromacs Users mailing list
> >>>>
> >>>> * Please search the archive at
> >>>> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> >>>> posting!
> >>>>
> >>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >>>>
> >>>> * For (un)subscribe requests visit
> >>>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> >>>> send a mail to gmx-users-request at gromacs.org.
> >>> --
> >>> Gromacs Users mailing list
> >>>
> >>> * Please search the archive at
> >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> >> posting!
> >>>
> >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >>>
> >>> * For (un)subscribe requests visit
> >>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> >> send a mail to gmx-users-request at gromacs.org.
> >> --
> >> Gromacs Users mailing list
> >>
> >> * Please search the archive at
> >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> >> posting!
> >>
> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >>
> >> * For (un)subscribe requests visit
> >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> >> send a mail to gmx-users-request at gromacs.org.
> >>
> > --
> > Gromacs Users mailing list
> >
> > * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
> >
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >
> > * For (un)subscribe requests visit
> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.