[gmx-users] em.gro file doesnt show a reasonable structure in VMD

[Justin Lemkul]

On 8/25/15 7:51 AM, faride badalkhani wrote:
> Hi,
>
> Thanks for the answer. I have shred the files via dropbox:
> https://www.dropbox.com/sh/bgcnpwrbvj7ocxg/AAAFKNlpEs5BREDmFPWoUfGma?dl=0
>

You have no bonded interactions defined in your topology, so naturally 
everything flies apart.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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