[gmx-users] Fatal error: Residue 'GTP' not found in residue topology, database"

Justin Lemkul jalemkul at vt.edu
Fri Aug 28 14:24:53 CEST 2015


Please heed this:

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On 8/28/15 2:01 AM, Raag Saluja wrote:
> Yes,I did, Mark. Thanks! But I don't need GTP. The pdb file just shows a
> GTP-binding site. So, how do I proceed?
>

If GTP isn't relevant to your study, remove it from the coordinate file before 
passing it to pdb2gmx.

-Justin

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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

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