[gmx-users] Fatal error: Residue 'GTP' not found in residue topology, database"

Justin Lemkul jalemkul at vt.edu
Fri Aug 28 14:24:53 CEST 2015

Please heed this:

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On 8/28/15 2:01 AM, Raag Saluja wrote:
> Yes,I did, Mark. Thanks! But I don't need GTP. The pdb file just shows a
> GTP-binding site. So, how do I proceed?

If GTP isn't relevant to your study, remove it from the coordinate file before 
passing it to pdb2gmx.



Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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