[gmx-users] Creating box,

[Bishnu Acharya]

Thank you very much for your suggestion.

On Tue, Feb 3, 2015 at 7:35 PM, Justin Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 2/3/15 8:32 PM, Bishnu Acharya wrote:
>
>> Dear Gromacs User,
>>
>> I am new in Gromacs. I want to create rectangular box like dimensions 5.0
>>   5.0  15.0 and want to put nonane-water-nonane on it. I mean there layers
>> first nonane and water and again nonane layers.
>>
>
> There aren't two nonane layers, because the nonane is continuous via PBC.
> So really you just have a simple biphasic system.  Conveniently, there's a
> tutorial that illustrates how to do that:
>
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/
> gmx-tutorials/biphasic/index.html
>
> -Justin
>
> --
> ==================================================
>
> Justin A. Lemkul, Ph.D.
> Ruth L. Kirschstein NRSA Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 629
> University of Maryland, Baltimore
> 20 Penn St.
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>
> jalemkul at outerbanks.umaryland.edu | (410) 706-7441
> http://mackerell.umaryland.edu/~jalemkul
>
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