[gmx-users] Salt bridge calculation using GROMACS analysis tools
agnivogromacs14 at gmail.com
Mon Feb 9 03:45:17 CET 2015
I am trying to calculate salt bridges between a DNA and a protein from a
COM pulling simulation trajectory. Searching the forum I found a post
mentioning that "g_dist" is better in this regard compared to "g_hbond".
Post link :
Then there is the "g_saltbr" tool. I am confused now as to what to use. If
I want to use "g_dist" how should I proceed ?
Thanks & Regards
Grad Student, Iowa State University.
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