[gmx-users] single strand DNA in hairpin conformation

Erik Marklund erik.marklund at chem.ox.ac.uk
Thu Feb 12 14:26:31 CET 2015

Dear Ursula,

Try macromolecular builder. It will require a bit of work, essentially building a helix with an unstructured loop that you relax according to a potential function.

Kind regards,

Erik Marklund, PhD
Postdoctoral Research Fellow, Fulford JRF

Department of Chemistry
Physical & Theoretical Chemistry Laboratory
University of Oxford
South Parks Road

On 12 Feb 2015, at 13:02, Urszula Uciechowska <urszula.uciechowska at biotech.ug.edu.pl<mailto:urszula.uciechowska at biotech.ug.edu.pl>> wrote:

Hi gromacs users,

Does anyone know how to build a ssDNA in hairpin conformation?
Does anyone know maybe other free software where I could do this?

Thank you in advance for any suggestions

Best regards

University of Gdansk and Medical Univesity of Gdansk
Department of Molecular and Cellular Biology
ul. Kladki 24
80-822 Gdansk

Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego

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