[gmx-users] can't generate pdb file in g_cluster
Nizar Masbukhin
nizar.fkub08 at gmail.com
Thu Jan 1 10:41:06 CET 2015
hi gromacs users,
while i was trying to cluster structure using:
g_cluster_mpi -f traj -s chainB.pdb -method gromos -cl out.pdb -n
index_20-29_ca.ndx
error message appeared
[nizars-mbp:01757] *** Process received signal ***
[nizars-mbp:01757] Signal: Segmentation fault: 11 (11)
[nizars-mbp:01757] Signal code: Address not mapped (1)
[nizars-mbp:01757] Failing at address: 0x0
[nizars-mbp:01757] [ 0] 0 libsystem_platform.dylib
0x00007fff924485aa _sigtramp + 26
[nizars-mbp:01757] [ 1] 0 ???
0x0000206000000000 0x0 + 35596688949248
[nizars-mbp:01757] *** End of error message ***
this wasn't happening if i am not using -cl flag.
what is libsystem_platform.dylib ?
do i miss some library?
--
Thanks
My Best Regards, Nizar
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