[gmx-users] Problem in energy minimization of Protein-ligand complex in Lipid membrane

[Padmani Sandhu]

Hello everyone,



I am trying to energy minimize protein-ligand complex in lipid membrane. I
am using "LAMBADA" script, after extracting Ligand. LAMBADA script do not
recognise ligand molecule, after insertion when I am trying to reinsert
ligand in to Prot_memb system, it does not bind to protein as the script
changes the co-ordinates of the protein.



Please suggest me some solution.



Padmani