[gmx-users] Problem in energy minimization of Protein-ligand complex in Lipid membrane

Padmani Sandhu padmanisandhu09 at gmail.com
Sat Jan 10 11:39:29 CET 2015

Hello everyone,

I am trying to energy minimize protein-ligand complex in lipid membrane. I
am using "LAMBADA" script, after extracting Ligand. LAMBADA script do not
recognise ligand molecule, after insertion when I am trying to reinsert
ligand in to Prot_memb system, it does not bind to protein as the script
changes the co-ordinates of the protein.

Please suggest me some solution.


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