[gmx-users] Atomtype OW not found

[Mark Abraham]

Hi,

Does that script support such prehistoric versions of GROMACS?

Mark

On Wed, Jun 3, 2015 at 3:40 PM Rasha Alqus <rasha.alqus at manchester.ac.uk>
wrote:

> Dear Gromacs users,
> I am trying to run an md of carbohydrate systems in water, the pdb of
> carbohydrate produced in glycame builder, files were loaded in amber to
> produce topolgy file and coordinate using glycame force file.
> I have run glycam2gmx.pl script to convert files into gromacs ones. I
> would like to solavte the sytem using tip5p, but when i run the grompp i
> get an error
>
> program grompp_d, VERSION 4.5.4
> Source code file: toppush.c, line: 1166
> Fatal error:
> Atomtype OW not found
> For more information and tips for troubleshooting, please check the GROMACS
>
> I also tried to do that with other water model and it give me the same
> issue, can you please help me to solve that issue.
>
> Thank for the help
> Regards
> rasha
>
>
>
>
>
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