[gmx-users] installation errors

Mark Abraham mark.j.abraham at gmail.com
Mon Jun 22 22:10:08 CEST 2015


Hi,

The solution suggested by Parvez should work, but really you should not
install this version of GROMACS any more (at least get the bug fixes in
4.5.7!) and should do so only after reading the install instructions on the
GROMACS webpage, which deal specifically with the issue you report.

Mark

On Mon, Jun 22, 2015 at 8:44 PM mah maz <mahmaz71 at gmail.com> wrote:

> Thanks Parvez! but it was not the solution. do you have any other ideas to
> help?
>
> On Sun, Jun 21, 2015 at 1:42 PM, mah maz <mahmaz71 at gmail.com> wrote:
>
> > Dear all,
> > I am trying to install a new version of gromacs(rather than rpm) on my
> > system. I apply these commands:(in root while im superuser)
> > tar -xzvf fftw-3.3.4.tar.gz
> > cd fftw-3.3.4
> > ./configure --enable-float --enable-threads
> > make
> > make install
> >
> > and for gromacs:
> >
> > tar -xzvf gromacs-4.5.5.tar.gz
> > cd gromacs-4.5.5
> > ./configure
> > make
> > after this command the following errors occur:
> > can not be used when making a shared object
> > recompile with -fPIC
> > /usr/local/lib64/libfftw3.a:couldnt read symbols:bad value
> > collect2: error: ld returned 1 exit status
> > make[3]:***[libmd.la] error1
> > make[3]: leaving directory '/gromacs-4.5.5/src/mdlib
> > make[2]: [all-recursive] error1
> > make[2]: leaving directory '/gromacs-4.5.5/src
> > make[1]: error2
> > make[1]: leaving directory '/gromacs-4.5.5/src
> > make***[all-recursive] error1
> > what should i do? is it because of the incompatibility of the
> > fftw version and gromacs version?
> > thanks!
> >
> >
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