[gmx-users] Biphasic Systems for BSA

[Justin Lemkul]

On 6/27/15 9:48 PM, James Lord wrote:
> Hi Justin,
> Thanks for your email. Would you please tell me how I can do this? Sorry to
> bother you. below is the PBD I generated with Swiss-PdbViewr.
>
> https://drive.google.com/file/d/0B0YMTXH1gmQsdGd2Z2xtVENzZkk/view
>

This is very simple with standard Linux command-line tools, e.g. to get monomer 
chain A:

grep " A " 3V03.pdb | grep "ATOM\|HETATM" > chainA.pdb

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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