[gmx-users] (no subject)

[Vidyalakshmi CM]

Hi,

You may use the mdp files from the tutorial
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/lysozyme/
(It has topologies for energy minimzation, nvt and npt simulations and md
simulations run).

Regards,
C.M.Vidyalakshmi

On Sun, Jun 28, 2015 at 8:19 PM, masoud aliyar <masoud.aliyar at gmail.com>
wrote:

> Hello dear friends
>
> I want to simulate a Ligand-Protein complex in GROMACS by using amber
> forcefield
> <
> https://www.google.com/search?q=forcefield&newwindow=1&sa=X&biw=1366&bih=657&tbm=isch&tbo=u&source=univ&ei=WEaQVYH_AoWdsgH06q6ICg&ved=0CE4QsAQ
> >
> and need essential MDP files. Can anyone provide me that files?
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>