[gmx-users] Doubt on membrane patch

[Justin Lemkul]

On 6/29/15 1:27 AM, vijayakumar gosu wrote:
> Dear Gromacs users .
>
> I am working on membrane simulations, I have replicted the membrane patch
> of DPPC128.pdb using genconf  with nbox. However almost 512 lipids seems
> larger for my GPCR and takes long computational time. How can I adjust the
> numbdr of lipids to become 300 patch, before inflation and shrinking
> process.
>

gmxbox (gmx solvate in 5.0) -cs membrane.gro -o membrane_new.gro -box (whatever 
size is required, manipulate x and y while keeping z the same as the original 
membrane)

-Justin

> Thanks in advance
>

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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