[gmx-users] Secondary Structure Restraints: martinize.py

[shivangi nangia]

Hello,

I wish to turn off the secondary structure restraint in half of the peptide
while using martinze.py.

Is there any way in which this can be done.

I have tried to delete the columns in .dssp file which tell about the
structure and character of the peptide but I still get a completely helical
peptide on reverse coarse graining.

Thanks in advance.

Best,
sxn